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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
634
total RNA-seq
253
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
828
Transcription
461
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
228
August, 2021
162
June, 2019
159
February, 2021
143
May, 2020
120
July, 2018
101
August, 2017
94
February, 2023
67
July, 2019
66
May, 2022
47
September, 2023
46
October, 2019
40
May, 2021
39
November, 2019
37
March, 2020
23
February, 2020
19
April, 2020
15
November, 2018
14
May, 2023
8
January, 2021
6
April, 2018
6
October, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
782
bam
752
bigWig
677
tsv
383
bed narrowPeak
180
bigBed narrowPeak
175
bed bed3+
175
bed broadPeak
174
bigBed broadPeak
157
txt
150
fastq
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1453
Homo sapiens
Biosample type
1454
tissue
483
primary cell
195
in vitro differentiated cells
178
cell line
7
stem cell
Organ
473
connective tissue
adipose tissue
387
pancreas
272
kidney
206
liver
190
heart
158
bone element
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
53
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1359
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
864
GRCh38
820
hg19
Lab
1143
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
9
audit script error
assay_title!
ChIP-seq
lab.title!
Klaus Kaestner, Upenn
Stephen Parker, UMich
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
1454 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
67
6
1
7
4
3
1
1
4
kidney
49
75
64
13
6
1
1
1
liver
167
20
1
2
1
3
1
1
1
bone element
84
bone tissue
58
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