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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
587
total RNA-seq
252
ATAC-seq
174
single cell RNA-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
15
DNase-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
777
Transcription
299
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
February, 2021
229
August, 2021
June, 2019
143
May, 2020
120
July, 2018
108
August, 2017
95
February, 2023
77
July, 2019
66
May, 2022
47
October, 2019
47
September, 2023
40
May, 2021
40
November, 2019
38
March, 2020
25
February, 2020
19
April, 2020
16
November, 2018
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
624
tsv
570
bam
550
bigWig
218
bed narrowPeak
157
fastq
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
21
bigBed narrowPeak
15
bed broadPeak
14
bed bed3+
13
bigBed broadPeak
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
Organism
1160
Homo sapiens
Biosample type
1162
tissue
737
primary cell
170
in vitro differentiated cells
90
cell line
7
stem cell
Organ
384
pancreas
205
liver
196
kidney
163
heart
57
blood vessel
57
vasculature
51
eye
43
artery
31
brain
28
adipose tissue
28
connective tissue
21
musculature of body
20
lung
18
limb
15
epithelium
8
bone element
8
nerve
8
skeleton
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1067
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
654
GRCh38
627
hg19
Lab
850
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
audit script error
4
inconsistent ontology term
assay_title!
ChIP-seq
month_released!
February, 2021
June, 2019
May, 2019
BIOSAMPLE
ASSAY
1162 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
DNase-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
292
68
6
7
4
3
1
1
1
4
liver
167
20
3
1
1
1
2
1
kidney
49
75
59
6
1
1
1
coronary artery
1
36
heart left ventricle
3
2
18
4
1
1
1
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