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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
177
total RNA-seq
24
ATAC-seq
9
DNase-seq
7
single cell RNA-seq
6
WGBS
3
small RNA-seq
2
Hi-C
2
pCHi-C
1
RRBS
Assay category
187
Transcription
33
DNA accessibility
7
DNA methylation
2
3D chromatin structure
Date released
143
May, 2020
40
May, 2022
February, 2023
15
July, 2019
6
August, 2017
6
August, 2021
6
March, 2020
4
February, 2020
4
October, 2019
3
June, 2019
3
November, 2018
1
February, 2021
Available data
189
bigWig
170
bam
168
tsv
32
bed narrowPeak
9
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
6
fastq
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
Organism
231
Homo sapiens
Biosample type
231
tissue
83
cell line
23
primary cell
Organ
472
connective tissue
414
adipose tissue
370
pancreas
272
kidney
206
liver
154
heart
150
bone element
56
limb
55
brain
53
musculature of body
25
blood vessel
25
vasculature
23
eye
20
lung
18
ureter
10
artery
8
nerve
8
skeleton
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
231
AMP
Genome assembly (visualization)
191
hg19
169
GRCh38
Lab
191
AMP-T2D consortium
40
Karen Mohlke, UNC
assay_title!
ChIP-seq
month_released!
February, 2023
BIOSAMPLE
ASSAY
231 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
small RNA-seq
Hi-C
pCHi-C
RRBS
tissue
liver
167
20
2
1
3
1
1
1
1
aorta
1
4
2
1
1
right lobe of liver
3
1
2
1
2
coronary artery
1
1
2
tibial artery
1
1
2
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