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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
ChIP-seq
259
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
15
DNase-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
306
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
June, 2019
143
May, 2020
120
July, 2018
108
August, 2017
95
February, 2023
77
July, 2019
66
May, 2022
47
September, 2023
46
October, 2019
40
May, 2021
40
November, 2019
38
March, 2020
25
February, 2020
19
April, 2020
16
November, 2018
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1076
tsv
1022
bam
994
bigWig
226
bed narrowPeak
157
fastq
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
21
bigBed narrowPeak
15
bed broadPeak
14
bed bed3+
13
bigBed broadPeak
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1704
Homo sapiens
Biosample type
1706
tissue
785
primary cell
196
in vitro differentiated cells
178
cell line
7
stem cell
Organ
472
connective tissue
414
adipose tissue
384
pancreas
206
liver
204
kidney
163
heart
158
bone element
57
blood vessel
57
vasculature
51
eye
43
artery
31
brain
24
limb
21
musculature of body
20
lung
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1611
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1106
GRCh38
1079
hg19
Lab
1394
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
9
audit script error
assay_title!
ChIP-seq
month_released!
June, 2019
organ_slims!
skin of body
BIOSAMPLE
ASSAY
1706 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
DNase-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
292
67
6
7
4
3
1
1
1
4
kidney
49
75
64
6
1
1
1
liver
167
20
1
3
1
1
1
2
1
bone element
84
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