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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
21
ATAC-seq
17
pCHi-C
9
total RNA-seq
1
DNAme array
1
single cell RNA-seq
Assay category
21
DNA accessibility
10
Transcription
1
DNA methylation
Date released
251
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
59
September, 2020
58
May, 2020
48
March, 2020
48
May, 2021
47
September, 2023
41
October, 2019
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
August, 2017
10
November, 2020
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
October, 2017
1
September, 2018
Available data
bam
220
bigWig
199
tsv
41
fastq
27
bed narrowPeak
14
bigBed narrowPeak
2
bed bed3+
1
csv
Organism
49
Homo sapiens
Biosample type
21
primary cell
16
cell line
10
in vitro differentiated cells
2
tissue
Organ
17
pancreas
16
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
32
AMP
17
T1D
Genome assembly (visualization)
7
hg19
Lab
30
Kyle Gaulton, UCSD
19
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
assay_title!
ChIP-seq
files.file_type!
bam
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
49 results
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Clear Filters
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
single cell RNA-seq
primary cell
CD8-positive, alpha-beta T cell
1
2
monocyte
1
1
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
cell line
EndoC_BH1
16
in vitro differentiated cells
embryonic stem cell
5
5
tissue
pancreas
1
thymus
1
See all biosamples
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