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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 356ATAC-seq
  • ChIP-seq
  • 263single cell RNA-seq
  • 245total RNA-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 57WGBS
  • 56pCHi-C
  • 34Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 512Transcription
  • 443DNA accessibility
  • 79DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 5control
  • 5nucleotide modification
Date released
  • 251August, 2021
  • 205February, 2023
  • 176May, 2022
  • 143February, 2021
  • 59September, 2020
  • 58May, 2020
  • 48March, 2020
  • 48May, 2021
  • 47September, 2023
  • 41October, 2019
  • 26July, 2019
  • 25February, 2020
  • 19April, 2020
  • 16January, 2021
  • 15May, 2023
  • 14August, 2017
  • 10November, 2020
  • 8January, 2018
  • 7August, 2020
  • 5December, 2019
  • 5March, 2023
  • 4July, 2018
  • 4March, 2019
  • 4October, 2022
  • 2November, 2019
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1November, 2018
  • 1October, 2017
  • 1September, 2018
Available data
  • bam
  • 1779bigWig
  • 1600tsv
  • 501fastq
  • 492bed narrowPeak
  • 241bigBed narrowPeak
  • 220bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 1238Homo sapiens
Biosample type
  • 685tissue
  • 442primary cell
  • 61cell line
  • 51in vitro differentiated cells
  • 7stem cell
Organ
  • 237pancreas
  • 210kidney
  • 207epithelium
  • 141heart
  • 93bone element
  • 68liver
  • 52eye
  • 51vasculature
  • 50blood vessel
  • 40connective tissue
  • 39artery
  • 21brain
  • 20lung
  • 17musculature of body
  • 13adipose tissue
  • 9blood
  • 9bodily fluid
  • 8skeleton
  • 7limb
  • 2intestine
  • 2thymus
  • 2vein
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 793AMP
  • 324HPAP
  • 58T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 144hg19
  • 126GRCh38
  • 5hg18
Lab
  • 560AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 69Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 20Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 141inconsistent ontology term
  • 42audit script error
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
files.file_type!
  • bam
BIOSAMPLE
ASSAY

1246 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
DNase-seq
snDrop-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
...and 5 more
tissue
kidney756449611
bone element84
islet of Langerhans302674314
liver201203111
coronary artery351
primary cell
Langerhans cell8548
pancreatic alpha cell2942311
pancreatic beta cell1611161
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell2211
cell line
EndoC_BH118162321
HepG29222
EndoC-BH1
HEK293T2
GM128781
in vitro differentiated cells
embryonic stem cell651
adipocyte811
cardiomyocytes (cardiac muscle cell)222
chondrocyte5
immature adipocyte22
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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