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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
24
Transcription
5
DNA accessibility
1
DNA methylation
Target of assay
3
control
Date released
14
July, 2019
12
February, 2020
2
March, 2020
2
October, 2019
1
February, 2023
1
October, 2017
Available data
47
bigWig
45
bam
bed bed3+
31
bed narrowPeak
31
bigBed narrowPeak
30
bed broadPeak
30
bigBed broadPeak
26
tsv
3
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
32
Homo sapiens
Biosample type
29
tissue
3
primary cell
Organ
719
pancreas
515
connective tissue
416
adipose tissue
epithelium
232
liver
229
heart
224
kidney
159
bone element
121
vasculature
120
blood vessel
103
artery
52
eye
33
brain
23
musculature of body
20
limb
20
lung
16
skeleton
15
embryo
9
blood
9
bodily fluid
6
nerve
4
spleen
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
32
AMP
Genome assembly (visualization)
15
hg19
14
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ChIP-seq
files.file_type!
bed bed3+
bedpe
organ_slims!
epithelium
BIOSAMPLE
ASSAY
32 results
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total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
RRBS
tissue
frontal cortex
2
1
1
brain
1
1
1
cerebellum (Hemisphere)
1
1
1
Ammon's horn
1
1
cerebellum
2
+ See 13 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
See all biosamples
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