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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
total RNA-seq
ChIP-seq
46
ATAC-seq
6
single cell RNA-seq
3
Hi-C
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
67
Transcription
47
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Date released
60
February, 2021
35
February, 2023
9
July, 2019
6
August, 2021
4
March, 2020
3
February, 2020
3
October, 2019
Available data
81
bam
74
bigWig
68
tsv
56
bed narrowPeak
bed bed3+
10
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
120
Homo sapiens
Biosample type
60
cell line
55
tissue
5
primary cell
Organ
720
pancreas
515
connective tissue
416
adipose tissue
377
epithelium
232
liver
229
heart
224
kidney
159
bone element
121
vasculature
120
blood vessel
103
artery
52
eye
33
brain
23
musculature of body
20
limb
20
lung
16
skeleton
15
embryo
9
blood
9
bodily fluid
6
nerve
4
spleen
3
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
120
AMP
Genome assembly (visualization)
105
GRCh38
73
hg19
Lab
120
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
ChIP-seq
files.file_type!
bed bed3+
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
120 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
8
tissue
coronary artery
1
36
aorta
1
4
1
2
1
thoracic aorta
2
1
ascending aorta
2
pulmonary artery
2
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primary cell
endothelial cell of umbilical vein
2
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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