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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 1527total RNA-seq
  • 529ATAC-seq
  • 369single cell RNA-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 6DNase-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1918Transcription
  • 624DNA accessibility
  • 97DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 707February, 2021
  • 291May, 2020
  • 276August, 2021
  • 234May, 2021
  • 205February, 2023
  • 200May, 2022
  • 168July, 2018
  • 113August, 2017
  • 108July, 2019
  • 65October, 2019
  • 61March, 2020
  • 59September, 2020
  • 49April, 2018
  • 48November, 2019
  • 47September, 2023
  • 41September, 2018
  • 25February, 2020
  • 19April, 2020
  • 16January, 2021
  • 15February, 2018
  • 15May, 2023
  • 15November, 2020
  • 10December, 2019
  • 9November, 2018
  • 8January, 2018
  • 7August, 2020
  • 7October, 2017
  • 5January, 2019
  • 5March, 2023
  • 5September, 2017
  • 4August, 2018
  • 4March, 2019
  • 4October, 2022
  • 3June, 2018
  • 2October, 2018
  • 1August, 2022
  • 1December, 2018
Available data
  • 1814bam
  • 1779bigWig
  • 1600tsv
  • 501fastq
  • 492bed narrowPeak
  • 241bigBed narrowPeak
  • 220bed bed3+
  • bed broadPeak
  • 206bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 2844Homo sapiens
Biosample type
  • 1692tissue
  • 781primary cell
  • 195in vitro differentiated cells
  • 177cell line
  • 7stem cell
Organ
  • 719pancreas
  • 522connective tissue
  • 416adipose tissue
  • 379epithelium
  • 234liver
  • 229heart
  • 224kidney
  • 159bone element
  • 123vasculature
  • 122blood vessel
  • 103artery
  • 52eye
  • 36brain
  • 24musculature of body
  • 20limb
  • 20lung
  • 16skeleton
  • 15embryo
  • 9blood
  • 9bodily fluid
  • 6nerve
  • 4spleen
  • 3vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2301AMP
  • 324HPAP
  • 156T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1724hg19
  • 1655GRCh38
  • 5hg18
Lab
  • 2047AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 189Kyle Gaulton, UCSD
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 20Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 290inconsistent ontology term
  • 42audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
files.file_type!
  • bed broadPeak
BIOSAMPLE
ASSAY

2852 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
DNase-seq
FAIRE-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR RNA-seq
...and 7 more
tissue
adipose tissue382331
islet of Langerhans2926667431411
kidney4975646111
liver16720131111
bone element84
primary cell
Langerhans cell8548
pancreatic alpha cell523512311
pancreatic beta cell212312161
monocyte54151
exocrine cell39
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
adipocyte581
embryonic stem cell761
cell line
EndoC_BH1331916232
smooth muscle cell of the coronary artery528
HepG21411222
H1-hESC8
EndoC-BH1
stem cell
SB Ad3.11
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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