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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
33
DNase-seq
6
total RNA-seq
5
RRBS
4
Hi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
Assay category
34
DNA accessibility
8
Transcription
6
DNA methylation
4
3D chromatin structure
Date released
33
June, 2019
10
July, 2019
4
August, 2017
3
March, 2020
2
February, 2020
May, 2022
1
January, 2018
Available data
41
bigWig
40
bam
33
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
bedpe bed3+
2
fastq
2
hic
Organism
53
Homo sapiens
Biosample type
49
tissue
4
primary cell
Organ
pancreas
530
connective tissue
417
adipose tissue
310
epithelium
302
kidney
256
heart
197
liver
159
bone element
132
vasculature
129
blood vessel
107
artery
68
brain
56
eye
56
limb
53
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
53
AMP
Genome assembly (visualization)
43
hg19
40
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ChIP-seq
files.file_type!
bedpe bed3+
month_released!
May, 2022
organ_slims!
pancreas
BIOSAMPLE
ASSAY
53 results
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DNase-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
WGBS
pCHi-C
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
1
4
1
1
gastrocnemius medialis
1
4
psoas muscle
2
1
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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