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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
total RNA-seq
103
ATAC-seq
ChIP-seq
40
single cell RNA-seq
1
pCHi-C
Assay category
246
Transcription
103
DNA accessibility
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
168
July, 2018
113
August, 2017
108
July, 2019
65
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
16
January, 2021
15
February, 2018
15
May, 2023
15
November, 2020
10
December, 2019
9
November, 2018
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
236
bigWig
233
bam
189
tsv
41
fastq
19
zippedFastqFolder
Organism
350
Homo sapiens
Biosample type
206
primary cell
143
tissue
1
cell line
Organ
144
liver
19
epithelium
19
pancreas
Project
246
AMP
59
HPAP
45
T1D
Genome assembly (visualization)
233
hg19
191
GRCh38
Lab
246
AMP-T2D consortium
59
Klaus Kaestner, Upenn
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
assay_title!
ChIP-seq
files.file_type!
bigBed broadPeak
organ_slims!
lymph node
BIOSAMPLE
ASSAY
350 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
primary cell
Langerhans cell
40
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
pancreatic alpha cell
15
2
macrophage
11
+ See 27 more…
tissue
liver
143
cell line
HepG2
1
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