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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
113
ATAC-seq
103
total RNA-seq
51
WGBS
11
Hi-C
11
snATAC-seq
10
MeRIP-seq
4
RRBS
4
pCHi-C
2
Capture-C
2
STARR-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
125
DNA accessibility
104
Transcription
55
DNA methylation
11
3D chromatin structure
1
DNA sequencing
Target of assay
5
control
5
nucleotide modification
Date released
124
May, 2022
56
February, 2023
22
November, 2019
17
August, 2021
17
May, 2021
16
September, 2020
10
November, 2020
9
February, 2021
8
January, 2021
6
March, 2020
5
August, 2017
5
March, 2019
4
July, 2018
4
July, 2019
4
October, 2019
3
October, 2022
2
February, 2020
1
August, 2022
1
December, 2018
1
May, 2020
Available data
662
bam
bigWig
591
tsv
337
fastq
102
bed narrowPeak
80
zippedFastqFolder
38
bigBed narrowPeak
15
bed bed3+
14
bed broadPeak
12
bigBed broadPeak
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
9
hic
6
txt
3
cool
2
hdf5
1
bed bed3
1
bedpe
1
csv
1
vcf
Organism
314
Homo sapiens
Biosample type
144
primary cell
127
tissue
44
cell line
Organ
266
pancreas
210
kidney
195
epithelium
149
heart
101
bone element
58
vasculature
57
blood vessel
52
eye
49
liver
47
artery
36
connective tissue
20
lung
18
brain
16
musculature of body
16
skeleton
13
limb
12
adipose tissue
8
blood
8
bodily fluid
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
145
AMP
142
HPAP
28
T1D
Genome assembly (visualization)
56
hg19
24
GRCh38
Lab
142
Klaus Kaestner, Upenn
72
AMP-T2D consortium
51
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
27
inconsistent ontology term
4
audit script error
1
inconsistent replicate
assay_title!
ChIP-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
315 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
Hi-C
snATAC-seq
MeRIP-seq
RRBS
pCHi-C
Capture-C
STARR-seq
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
single cell RNA-seq
whole genome sequencing assay
primary cell
pancreatic alpha cell
22
42
31
1
pancreatic beta cell
13
11
16
1
pancreatic acinar cell
4
1
Liver fetal (hepatocyte)
1
hepatocyte
1
tissue
islet of Langerhans
55
18
3
7
4
1
liver
20
3
1
1
1
1
pancreas
1
1
4
1
1
right lobe of liver
1
1
1
body of pancreas
1
cell line
EndoC_BH1
17
1
6
2
1
HepG2
1
9
2
2
2
1
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