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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 395ATAC-seq
  • 263single cell RNA-seq
  • 249total RNA-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 58WGBS
  • 57pCHi-C
  • 29Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 516Transcription
  • 482DNA accessibility
  • 80DNA methylation
  • 293D chromatin structure
  • 1DNA sequencing
Target of assay
  • 5control
  • 5nucleotide modification
Date released
  • 259August, 2021
  • 202February, 2023
  • 180May, 2022
  • 161February, 2021
  • 58May, 2020
  • 56September, 2020
  • 54May, 2021
  • 47September, 2023
  • 44March, 2020
  • 41October, 2019
  • 28November, 2019
  • 25February, 2020
  • 23July, 2019
  • 19April, 2020
  • 16January, 2021
  • 15May, 2023
  • 14August, 2017
  • 11November, 2020
  • 5December, 2019
  • 5March, 2019
  • 5March, 2023
  • 4July, 2018
  • 4October, 2022
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1November, 2018
  • 1September, 2018
Available data
  • 1814bam
  • bigWig
  • 1600tsv
  • 501fastq
  • 492bed narrowPeak
  • 241bigBed narrowPeak
  • 220bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 1273Homo sapiens
Biosample type
  • 713tissue
  • 443primary cell
  • 67cell line
  • 52in vitro differentiated cells
  • 6stem cell
Organ
  • 266pancreas
  • 210kidney
  • 195epithelium
  • 149heart
  • 101bone element
  • 58vasculature
  • 57blood vessel
  • 52eye
  • 49liver
  • 47artery
  • 36connective tissue
  • 20lung
  • 18brain
  • 16musculature of body
  • 16skeleton
  • 13limb
  • 12adipose tissue
  • 8blood
  • 8bodily fluid
  • 2intestine
  • 2thymus
  • 2vein
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 838AMP
  • 314HPAP
  • 58T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 186hg19
  • 185GRCh38
Lab
  • 613AMP-T2D consortium
  • 314Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 86Kyle Gaulton, UCSD
  • 47KPMP
  • 20Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1ITG
  • 1Maike Sander, UCSD
Audit category:
  • 149inconsistent ontology term
  • 42audit script error
  • 1inconsistent replicate
assay_title!
  • ChIP-seq
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

1281 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
DNase-seq
snDrop-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNAme array
...and 4 more
tissue
kidney756449611
islet of Langerhans653274314
bone element84
coronary artery351
liver1203111
primary cell
Langerhans cell8548
pancreatic alpha cell2242311
pancreatic beta cell1311161
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell2211
cell line
EndoC_BH117162321
HepG219222
smooth muscle cell of the coronary artery8
EndoC-BH1
HEK293T2
in vitro differentiated cells
neural progenitor cell10
adipocyte511
cardiomyocytes (cardiac muscle cell)1222
embryonic stem cell51
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
stem cell
SB Ad3.111
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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