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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
174
Transcription
82
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Date released
641
February, 2021
291
May, 2020
270
August, 2021
234
May, 2021
200
May, 2022
182
June, 2019
170
February, 2023
168
July, 2018
115
August, 2017
97
July, 2019
65
October, 2019
59
September, 2020
57
March, 2020
49
April, 2018
48
November, 2019
47
September, 2023
40
September, 2018
22
February, 2020
19
April, 2020
17
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
117
tsv
76
bed narrowPeak
64
xls
57
txt
25
bam
17
bigWig
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
269
Homo sapiens
Biosample type
223
tissue
26
cell line
21
in vitro differentiated cells
Organ
130
kidney
92
heart
13
liver
8
embryo
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
270
AMP
Genome assembly (visualization)
89
GRCh38
31
hg19
Lab
128
Katalin Susztak, Upenn
120
AMP-T2D consortium
18
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
ChIP-seq
files.file_type!
csv
files.file_type!!
csv
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
270 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 9 more…
cell line
HepG2
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
adipocyte
1
1
osteoblast
1
1
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