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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1290total RNA-seq
  • ChIP-seq
  • 470ATAC-seq
  • 235single cell RNA-seq
  • 200DNase-seq
  • 87RNA microarray
  • 58WGBS
  • 57snATAC-seq
  • 56pCHi-C
  • 33Hi-C
  • 18small RNA-seq
  • 17RRBS
  • 10MeRIP-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1547Transcription
  • 730DNA accessibility
  • 76DNA methylation
  • 333D chromatin structure
  • 1DNA sequencing
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 662February, 2021
  • 291May, 2020
  • 276August, 2021
  • 234May, 2021
  • 187June, 2019
  • 176May, 2022
  • 129February, 2023
  • 118July, 2018
  • 108July, 2019
  • 72October, 2019
  • 61March, 2020
  • 48November, 2019
  • 47September, 2023
  • 25February, 2020
  • 19April, 2020
  • 18September, 2020
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 10December, 2019
  • 9August, 2017
  • 5April, 2018
  • 5March, 2023
  • 4March, 2019
  • 4October, 2022
  • 3January, 2018
  • 1August, 2022
Available data
  • 1814bam
  • 1779bigWig
  • 1600tsv
  • fastq
  • 492bed narrowPeak
  • 241bigBed narrowPeak
  • 220bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 2551Homo sapiens
Biosample type
  • 1713tissue
  • 494primary cell
  • 175in vitro differentiated cells
  • 171cell line
  • 6stem cell
Organ
  • 520connective tissue
  • 411adipose tissue
  • 404pancreas
  • 302kidney
  • 259heart
  • 226liver
  • 210epithelium
  • 159bone element
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 65brain
  • 56eye
  • 56limb
  • 55musculature of body
  • 20lung
  • 18ureter
  • 16skeleton
  • 10embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 2177AMP
  • 156T1D
  • 155HPAP
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1604hg19
  • 1562GRCh38
Lab
  • 1947AMP-T2D consortium
  • 165Kyle Gaulton, UCSD
  • 155Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 20Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 287inconsistent ontology term
  • 15audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

2559 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
snDrop-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
...and 6 more
tissue
adipose tissue38231
islet of Langerhans1954874314
kidney497564136111
liver1672012111
bone element84
primary cell
Langerhans cell5121
monocyte54151
pancreatic alpha cell22251
pancreatic beta cell13161
naive thymus-derived CD4-positive, alpha-beta T cell1221
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
adipocyte581
embryonic stem cell561
cell line
EndoC_BH13319162321
smooth muscle cell of the coronary artery528
HepG291212
H1-hESC8
EndoC-BH1
stem cell
SB Ad3.11
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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