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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 1527total RNA-seq
  • 531ATAC-seq
  • 369single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 21RRBS
  • 18small RNA-seq
  • 11Hi-C
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1918Transcription
  • 832DNA accessibility
  • 97DNA methylation
  • 113D chromatin structure
  • 1DNA sequencing
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 707February, 2021
  • 291May, 2020
  • 274August, 2021
  • 234May, 2021
  • 205February, 2023
  • 200May, 2022
  • 187June, 2019
  • 168July, 2018
  • 115August, 2017
  • 108July, 2019
  • 68October, 2019
  • 59September, 2020
  • 51March, 2020
  • 49April, 2018
  • 47September, 2023
  • 46November, 2019
  • 41September, 2018
  • 25February, 2020
  • 19April, 2020
  • 18November, 2018
  • 16January, 2021
  • 16November, 2020
  • 15February, 2018
  • 15May, 2023
  • 10December, 2019
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5January, 2019
  • 5September, 2017
  • 4August, 2018
  • 4March, 2019
  • 4March, 2023
  • 3June, 2018
  • 2October, 2018
  • 1August, 2022
  • 1December, 2018
  • 1October, 2022
Available data
  • 1814bam
  • 1779bigWig
  • 1600tsv
  • 501fastq
  • 492bed narrowPeak
  • 241bigBed narrowPeak
  • 220bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 3029Homo sapiens
Biosample type
  • 1859tissue
  • 803primary cell
  • 192in vitro differentiated cells
  • 176cell line
  • 7stem cell
Organ
  • 721pancreas
  • 531connective tissue
  • 418adipose tissue
  • 389epithelium
  • 301kidney
  • 256heart
  • 237liver
  • 159bone element
  • 131vasculature
  • 128blood vessel
  • 107artery
  • 68brain
  • 56eye
  • 56limb
  • 55musculature of body
  • 20lung
  • 18ureter
  • 16skeleton
  • 15embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5spleen
  • 3vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2490AMP
  • 321HPAP
  • 156T1D
  • 47KPMP
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • 1886hg19
  • 1860GRCh38
  • 5hg18
Lab
  • 2237AMP-T2D consortium
  • 321Klaus Kaestner, Upenn
  • 189Kyle Gaulton, UCSD
  • 141Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 18Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 289inconsistent ontology term
  • 38audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
files.file_type!
  • hic
BIOSAMPLE
ASSAY

3037 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
RRBS
small RNA-seq
Hi-C
MeRIP-seq
FAIRE-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR RNA-seq
...and 7 more
tissue
adipose tissue382331
islet of Langerhans2926861741141
kidney49756413611
liver16720123111
bone element84
primary cell
Langerhans cell8548
pancreatic alpha cell52351231
pancreatic beta cell21231216
monocyte54151
exocrine cell39
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)191
neural progenitor cell710
adipocyte5811
embryonic stem cell761
cell line
EndoC_BH133196232
smooth muscle cell of the coronary artery528
HepG21411212
H1-hESC8
EndoC-BH1
stem cell
SB Ad3.11
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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