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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 517ATAC-seq
  • 212DNase-seq
  • 212total RNA-seq
  • 158single cell RNA-seq
  • 85RNA microarray
  • 84snATAC-seq
  • 69WGBS
  • 34Hi-C
  • 26pCHi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 818DNA accessibility
  • 374Transcription
  • 91DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 5control
  • 5nucleotide modification
Date released
  • 200May, 2022
  • 189February, 2023
  • 187June, 2019
  • 153August, 2021
  • 148February, 2021
  • 102May, 2020
  • 61May, 2021
  • 59September, 2020
  • 56October, 2019
  • 47September, 2023
  • 43July, 2019
  • 28November, 2019
  • 26August, 2017
  • 19April, 2020
  • 18November, 2018
  • 16January, 2021
  • 16March, 2020
  • 15May, 2023
  • 15September, 2018
  • 12November, 2020
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 5September, 2017
  • 4July, 2018
  • 4October, 2022
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1December, 2019
Available data
  • 1814bam
  • 1779bigWig
  • tsv
  • 501fastq
  • 492bed narrowPeak
  • 241bigBed narrowPeak
  • 220bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 1452Homo sapiens
Biosample type
  • 794tissue
  • 539primary cell
  • 65in vitro differentiated cells
  • 59cell line
  • 3stem cell
Organ
  • 311pancreas
  • 278kidney
  • 239epithelium
  • 101bone element
  • 91heart
  • 66vasculature
  • 65liver
  • 63blood vessel
  • 53connective tissue
  • 51eye
  • 49artery
  • 49limb
  • 48musculature of body
  • 42brain
  • 19lung
  • 18ureter
  • 17adipose tissue
  • 16skeleton
  • 9blood
  • 9bodily fluid
  • 5vein
  • 4spleen
  • 3nerve
  • 1bone marrow
  • 1embryo
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1thymus
Project
  • 1013AMP
  • 318HPAP
  • 58T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 506hg19
  • 461GRCh38
  • 5hg18
Lab
  • 765AMP-T2D consortium
  • 318Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 93Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 144inconsistent ontology term
  • 33audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

1460 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
DNase-seq
total RNA-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
Hi-C
pCHi-C
RRBS
MeRIP-seq
FAIRE-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
...and 5 more
tissue
kidney751349596111
islet of Langerhans67131734141
bone element84
liver202201311
coronary artery362
primary cell
Langerhans cell8548
pancreatic alpha cell3542251
pancreatic beta cell2311161
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell2211
in vitro differentiated cells
adipocyte8111
embryonic stem cell65
neural progenitor cell10
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
cell line
EndoC_BH118162321
HepG211212
smooth muscle cell of the coronary artery8
EndoC-BH1
HEK293T2
stem cell
SB Ad3.111
hESC1
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