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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
33
DNase-seq
4
RRBS
4
total RNA-seq
2
Hi-C
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
34
DNA accessibility
5
Transcription
4
DNA methylation
2
3D chromatin structure
Date released
33
June, 2019
July, 2019
5
March, 2020
4
August, 2017
2
February, 2020
1
January, 2018
1
May, 2022
Available data
36
bigWig
35
bam
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
5
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
txt
Organism
46
Homo sapiens
Biosample type
45
tissue
1
primary cell
Organ
716
pancreas
513
connective tissue
406
adipose tissue
382
epithelium
234
heart
229
kidney
229
liver
122
vasculature
120
blood vessel
104
artery
71
bone element
55
eye
51
limb
50
brain
46
musculature of body
20
lung
18
ureter
15
embryo
12
skeleton
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
46
AMP
Genome assembly (visualization)
40
hg19
35
GRCh38
Lab
46
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ChIP-seq
files.file_type!
txt
month_released!
July, 2019
BIOSAMPLE
ASSAY
46 results
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DNase-seq
RRBS
total RNA-seq
Hi-C
ATAC-seq
pCHi-C
single cell RNA-seq
tissue
muscle of arm
17
muscle of leg
13
skeletal muscle tissue
4
1
1
psoas muscle
2
2
1
forelimb muscle
1
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primary cell
skeletal muscle cell
1
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