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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
330
total RNA-seq
ChIP-seq
77
single cell RNA-seq
65
ATAC-seq
8
DNase-seq
4
WGBS
2
FAIRE-seq
2
small RNA-seq
Assay category
409
Transcription
75
DNA accessibility
4
DNA methylation
Date released
153
July, 2018
94
August, 2017
40
May, 2021
40
November, 2019
40
September, 2018
39
April, 2018
26
February, 2021
24
May, 2022
7
November, 2018
5
September, 2017
4
July, 2019
4
June, 2019
4
October, 2017
August, 2018
3
March, 2020
2
October, 2018
1
June, 2018
1
March, 2019
1
October, 2019
Available data
488
bam
459
bigWig
414
tsv
321
fastq
zippedFastqFolder
74
bed narrowPeak
32
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
488
Homo sapiens
Biosample type
332
tissue
121
primary cell
35
cell line
Organ
491
connective tissue
488
pancreas
405
adipose tissue
185
epithelium
171
liver
118
heart
92
kidney
83
vasculature
81
blood vessel
68
artery
66
bone element
49
limb
47
brain
40
musculature of body
18
ureter
14
embryo
8
skeleton
7
nerve
4
eye
4
spleen
3
vein
1
pericardium
Project
486
AMP
2
T1D
Genome assembly (visualization)
475
hg19
461
GRCh38
Lab
463
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
39
inconsistent ontology term
assay_title!
ChIP-seq
files.file_type!
zippedFastqFolder
month_released!
August, 2018
BIOSAMPLE
ASSAY
488 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
small RNA-seq
tissue
islet of Langerhans
266
6
38
1
1
body of pancreas
2
4
4
2
2
pancreas
1
2
2
1
primary cell
pancreatic beta cell
10
12
7
pancreatic alpha cell
10
10
6
pancreatic acinar cell
4
11
5
pancreatic ductal cell
4
10
4
pancreatic delta cell
11
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cell line
EndoC_BH1
33
1
Panc1
1
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