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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 1282total RNA-seq
  • 209DNase-seq
  • 175ATAC-seq
  • 106single cell RNA-seq
  • 18WGBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1406Transcription
  • 389DNA accessibility
  • 18DNA methylation
Target of assay
  • 3control
Date released
  • 564February, 2021
  • 233May, 2020
  • 187June, 2019
  • 186May, 2021
  • 164July, 2018
  • 101August, 2017
  • 82July, 2019
  • 49April, 2018
  • 46November, 2019
  • 40September, 2018
  • 31October, 2019
  • 25August, 2021
  • 24May, 2022
  • 17November, 2018
  • 15February, 2018
  • 13March, 2020
  • 7October, 2017
  • 6November, 2020
  • 5December, 2019
  • 5January, 2019
  • 5September, 2017
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1March, 2019
Available data
  • 1814bam
  • 1779bigWig
  • 1600tsv
  • 501fastq
  • 492bed narrowPeak
  • 241bigBed narrowPeak
  • 220bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 1814Homo sapiens
Biosample type
  • 1185tissue
  • 367primary cell
  • 145in vitro differentiated cells
  • 117cell line
Organ
  • 491connective tissue
  • 491pancreas
  • 405adipose tissue
  • 188epithelium
  • 171liver
  • 118heart
  • 92kidney
  • 83vasculature
  • 81blood vessel
  • 68artery
  • 66bone element
  • 49limb
  • 47brain
  • 40musculature of body
  • 18ureter
  • 14embryo
  • 8skeleton
  • 7nerve
  • 4eye
  • 4spleen
  • 3vein
  • 1pericardium
Project
  • 1716AMP
  • 98T1D
Genome assembly (visualization)
  • 1764hg19
  • 1735GRCh38
Lab
  • 1693AMP-T2D consortium
  • 120Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 153inconsistent ontology term
  • 1inconsistent replicate
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

1814 results

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Clear Filters
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
small RNA-seq
FAIRE-seq
pCHi-C
tissue
adipose tissue3812
islet of Langerhans26613861
liver14721
bone tissue58
heart41811
primary cell
monocyte5315
pancreatic beta cell10712
pancreatic alpha cell10612
pancreatic acinar cell4512
pancreatic ductal cell4410
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)191
neural progenitor cell710
induced pluripotent stem cell9
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
cell line
smooth muscle cell of the coronary artery528
EndoC_BH1331
H1-hESC8
HepG2511
early embryonic cell2
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