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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 206DNase-seq
  • ChIP-seq
  • 2ATAC-seq
Assay category
  • 208DNA accessibility
Date released
  • 187June, 2019
  • 9November, 2018
  • 7October, 2019
  • 2August, 2017
  • 1March, 2019
  • 1November, 2020
  • 1October, 2017
Available data
  • 1814bam
  • 1779bigWig
  • 1600tsv
  • 501fastq
  • 492bed narrowPeak
  • 241bigBed narrowPeak
  • 220bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 208Homo sapiens
Biosample type
  • 178tissue
  • 28primary cell
  • 1cell line
  • 1in vitro differentiated cells
Organ
  • 78kidney
  • 36limb
  • 33musculature of body
  • 32brain
  • 30heart
  • 18ureter
  • 16epithelium
  • 11vasculature
  • 9blood vessel
  • 9connective tissue
  • 9pancreas
  • 5liver
  • 4artery
  • 4eye
  • 2adipose tissue
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 208AMP
Genome assembly (visualization)
  • 206GRCh38
  • 184hg19
Lab
  • 206AMP-T2D consortium
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

208 results

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Clear Filters
DNase-seq
ATAC-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
primary cell
cardiac fibroblast3
endothelial cell of umbilical vein2
glomerular visceral epithelial cell2
kidney tubule cell2
astrocyte of the cerebellum1
cell line
Panc11
in vitro differentiated cells
adipocyte1
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