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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 278ATAC-seq
  • 209DNase-seq
  • 5FAIRE-seq
Assay category
  • 492DNA accessibility
Date released
  • 187June, 2019
  • 76August, 2021
  • 65February, 2023
  • 38May, 2022
  • 26November, 2019
  • 18February, 2021
  • 15October, 2019
  • 14September, 2018
  • 13May, 2021
  • 10August, 2017
  • 10November, 2018
  • 7July, 2019
  • 6October, 2017
  • 5September, 2017
  • 2November, 2020
Available data
  • 1814bam
  • 1779bigWig
  • 1600tsv
  • 501fastq
  • 492bed narrowPeak
  • 241bigBed narrowPeak
  • 220bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 492Homo sapiens
Biosample type
  • 389tissue
  • 69primary cell
  • 22in vitro differentiated cells
  • 12cell line
Organ
  • 144kidney
  • 77heart
  • 74pancreas
  • 58vasculature
  • 56blood vessel
  • 54epithelium
  • 49artery
  • 44limb
  • 33brain
  • 33musculature of body
  • 31eye
  • 28liver
  • 18ureter
  • 17connective tissue
  • 8bone element
  • 8skeleton
  • 6adipose tissue
  • 3nerve
  • 3vein
  • 2spleen
Project
  • 492AMP
Genome assembly (visualization)
  • 415GRCh38
  • 370hg19
Lab
  • 386AMP-T2D consortium
  • 64Katalin Susztak, Upenn
  • 20Karen Mohlke, UNC
  • 18Kyle Gaulton, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 16inconsistent ontology term
  • 1inconsistent replicate
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

492 results

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Clear Filters
ATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney64131
islet of Langerhans3711
coronary artery362
liver202
heart18
primary cell
monocyte13
pancreatic beta cell7
pancreatic alpha cell6
pancreatic acinar cell5
pancreatic ductal cell4
in vitro differentiated cells
neural progenitor cell10
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
adipocyte11
cardiac precursors (cardiac muscle cell)1
cardiomyocytes (cardiac muscle cell)1
cell line
smooth muscle cell of the coronary artery8
EndoC_BH11
HepG21
Panc11
glomerular visceral epithelial cell1
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