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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
209
DNase-seq
22
ATAC-seq
5
FAIRE-seq
Assay category
236
DNA accessibility
Date released
187
June, 2019
14
September, 2018
12
October, 2019
10
August, 2017
10
November, 2018
September, 2017
2
July, 2019
1
November, 2020
Available data
1809
bam
1771
bigWig
1584
tsv
422
bed narrowPeak
420
fastq
236
bigBed narrowPeak
216
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
154
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
hic
8
csv
5
hdf5
4
bed bedgraph
3
cool
2
bed bed3
2
ibed
1
bedpe
1
tar
1
vcf
Organism
236
Homo sapiens
Biosample type
184
tissue
47
primary cell
3
in vitro differentiated cells
2
cell line
Organ
80
kidney
36
limb
35
epithelium
33
brain
33
musculature of body
30
heart
27
pancreas
18
ureter
13
connective tissue
12
vasculature
10
blood vessel
6
liver
4
adipose tissue
4
artery
4
eye
3
vein
2
nerve
1
spleen
Project
236
AMP
Genome assembly (visualization)
226
GRCh38
213
hg19
Lab
236
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_title!
ChIP-seq
files.file_type!
hic
month_released!
February, 2023
September, 2017
BIOSAMPLE
ASSAY
236 results
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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
1
muscle of leg
13
+ See 42 more…
primary cell
pancreatic beta cell
5
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic ductal cell
4
cardiac fibroblast
3
+ See 22 more…
in vitro differentiated cells
adipocyte
1
2
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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