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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
196
DNase-seq
27
ATAC-seq
4
FAIRE-seq
Assay category
227
DNA accessibility
Date released
185
June, 2019
14
September, 2018
10
August, 2017
November, 2018
10
October, 2019
5
September, 2017
2
July, 2019
1
November, 2020
Available data
1729
bam
1702
bigWig
1542
tsv
483
fastq
433
bed narrowPeak
227
bigBed narrowPeak
207
bed bed3+
195
bed broadPeak
193
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
7
bed bedgraph
7
csv
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
227
Homo sapiens
Biosample type
170
tissue
52
primary cell
3
in vitro differentiated cells
2
cell line
Organ
80
kidney
40
epithelium
36
limb
33
musculature of body
31
brain
30
heart
29
pancreas
18
ureter
12
connective tissue
12
vasculature
10
blood vessel
artery
4
eye
3
adipose tissue
3
liver
3
vein
2
nerve
Project
227
AMP
Genome assembly (visualization)
218
GRCh38
204
hg19
Lab
227
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_title!
ChIP-seq
month_released!
November, 2018
organ_slims!
artery
BIOSAMPLE
ASSAY
227 results
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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
tissue
heart
18
muscle of arm
17
kidney
13
1
muscle of leg
13
brain
12
+ See 38 more…
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cardiac fibroblast
3
+ See 22 more…
in vitro differentiated cells
adipocyte
1
2
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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