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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 209DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 241DNA accessibility
Date released
  • 187June, 2019
  • 14September, 2018
  • 12October, 2019
  • 10August, 2017
  • 10November, 2018
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 1814bam
  • 1779bigWig
  • 1600tsv
  • 501fastq
  • 492bed narrowPeak
  • 241bigBed narrowPeak
  • 220bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 241Homo sapiens
Biosample type
  • 184tissue
  • 52primary cell
  • 3in vitro differentiated cells
  • 2cell line
Organ
  • 80kidney
  • 40epithelium
  • 36limb
  • 33brain
  • 33musculature of body
  • 32pancreas
  • 30heart
  • 18ureter
  • 13connective tissue
  • 12vasculature
  • 10blood vessel
  • 6liver
  • 4adipose tissue
  • 4artery
  • 4eye
  • 3vein
  • 2nerve
  • 1spleen
Project
  • 241AMP
Genome assembly (visualization)
  • 231GRCh38
  • 218hg19
Lab
  • 241AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

241 results

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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
tissue
heart18
muscle of arm17
brain14
kidney131
muscle of leg13
primary cell
pancreatic beta cell7
pancreatic alpha cell6
pancreatic acinar cell5
pancreatic ductal cell4
cardiac fibroblast3
in vitro differentiated cells
adipocyte12
cell line
Panc11
glomerular visceral epithelial cell1
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