Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 1278total RNA-seq
  • 209DNase-seq
  • 136ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 5Hi-C
Assay category
  • 1402Transcription
  • 350DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
Target of assay
  • 3control
Date released
  • 546February, 2021
  • 233May, 2020
  • 187June, 2019
  • 180May, 2021
  • 164July, 2018
  • 101August, 2017
  • 85July, 2019
  • 49April, 2018
  • 40September, 2018
  • 31October, 2019
  • 20May, 2022
  • 20November, 2019
  • 17August, 2021
  • 17March, 2020
  • 17November, 2018
  • 15February, 2018
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5December, 2019
  • 5January, 2019
  • 5November, 2020
  • 5September, 2017
  • 3August, 2018
  • 3February, 2023
  • 3June, 2018
  • 3September, 2020
  • 2October, 2018
Available data
  • 1814bam
  • 1779bigWig
  • 1600tsv
  • 501fastq
  • 492bed narrowPeak
  • 241bigBed narrowPeak
  • 220bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 1779Homo sapiens
Biosample type
  • 1157tissue
  • 366primary cell
  • 144in vitro differentiated cells
  • 111cell line
  • 1stem cell
Organ
  • 495connective tissue
  • 462pancreas
  • 406adipose tissue
  • 200epithelium
  • 190liver
  • 110heart
  • 92kidney
  • 76vasculature
  • 74blood vessel
  • 60artery
  • 58bone element
  • 50brain
  • 43limb
  • 41musculature of body
  • 18ureter
  • 15embryo
  • 7nerve
  • 4eye
  • 4spleen
  • 3vein
  • 1blood
  • 1bodily fluid
  • 1pericardium
Project
  • 1671AMP
  • 98T1D
  • 10HPAP
Genome assembly (visualization)
  • 1722hg19
  • 1676GRCh38
  • 5hg18
Lab
  • 1640AMP-T2D consortium
  • 103Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 10Klaus Kaestner, Upenn
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 145inconsistent ontology term
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

1779 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
GRO-seq
Hi-C
tissue
adipose tissue38122
islet of Langerhans2601361
liver1472201
bone tissue58
heart41811
primary cell
monocyte532
pancreatic alpha cell101312
pancreatic beta cell101012
pancreatic acinar cell4512
pancreatic ductal cell4410
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
adipocyte413
embryonic stem cell26
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1332
H1-hESC8
HepG251
Panc111
stem cell
hESC1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego