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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 237total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 12DNase-seq
  • 5GRO-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 371Transcription
  • 102DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Date released
  • 106August, 2017
  • 76February, 2023
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2018
  • 41September, 2020
  • 24May, 2022
  • 18November, 2018
  • 15February, 2018
  • 8October, 2017
  • 7August, 2020
  • 5January, 2018
  • 5January, 2019
  • 5September, 2017
  • 4August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1December, 2018
  • 1March, 2019
Available data
  • 1814bam
  • 1779bigWig
  • 1600tsv
  • 501fastq
  • 492bed narrowPeak
  • 241bigBed narrowPeak
  • 220bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 501Homo sapiens
Biosample type
  • 315primary cell
  • 157tissue
  • 21in vitro differentiated cells
  • 7cell line
  • 1stem cell
Organ
  • 324pancreas
  • 185epithelium
  • 13liver
  • 11connective tissue
  • 7adipose tissue
  • 5embryo
  • 4spleen
  • 3brain
  • 2musculature of body
Project
  • 332AMP
  • 169HPAP
Genome assembly (visualization)
  • 304hg19
  • 299GRCh38
  • 5hg18
Lab
  • 306AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
  • 7inconsistent ontology term
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

501 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell5212136
Langerhans cell3427
pancreatic beta cell211210
exocrine cell39
pancreatic acinar cell495
tissue
islet of Langerhans9762011
body of pancreas422
liver121
spleen121
adipose tissue3
in vitro differentiated cells
pancreatic endoderm41
definitive endodermal cell21
primitive gut cell21
embryonic stem cell2
endocrine cell2
cell line
HepG2511
stem cell
hESC1
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