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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
pCHi-C
Assay category
24
Transcription
Target of assay
3
control
Date released
12
February, 2020
11
July, 2019
2
March, 2020
1
October, 2019
Available data
50
bigWig
47
bam
35
bed bed3+
33
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
26
tsv
3
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
26
Homo sapiens
Biosample type
23
tissue
3
primary cell
Organ
478
connective tissue
416
pancreas
401
adipose tissue
165
liver
156
epithelium
76
heart
62
blood vessel
62
vasculature
58
bone element
56
artery
26
brain
24
kidney
9
musculature of body
7
limb
6
embryo
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
26
AMP
Genome assembly (visualization)
12
GRCh38
12
hg19
Lab
26
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ChIP-seq
month_released!
August, 2021
BIOSAMPLE
ASSAY
26 results
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total RNA-seq
small RNA-seq
single cell RNA-seq
pCHi-C
tissue
frontal cortex
2
1
Ammon's horn
1
1
cerebellum
2
cerebellum (Hemisphere)
1
1
diencephalon
1
1
+ See 11 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
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