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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 84RNA microarray
  • 59total RNA-seq
  • 13single cell RNA-seq
  • 3ATAC-seq
  • 1MPRA
  • 1snATAC-seq
Assay category
  • 72Transcription
  • 4DNA accessibility
Date released
  • 89February, 2021
  • 57August, 2021
  • 7February, 2023
  • 7May, 2022
  • 1October, 2022
Available data
  • 1814bam
  • 1779bigWig
  • 1600tsv
  • 501fastq
  • 492bed narrowPeak
  • 241bigBed narrowPeak
  • 220bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 160Homo sapiens
Biosample type
  • 157tissue
  • 3in vitro differentiated cells
  • 1cell line
Organ
  • 88bone element
  • 62kidney
  • 6pancreas
  • 4skeleton
  • 1musculature of body
Project
  • 161AMP
Genome assembly (visualization)
  • 4hg19
Lab
  • 95AMP-T2D consortium
  • 57Katalin Susztak, Upenn
  • 6Kyle Gaulton, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 85inconsistent ontology term
  • 6audit script error
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

161 results

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Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element84
kidney4913
islet of Langerhans6
acetabular part of hip bone1
ilium1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
cell line
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