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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 1391total RNA-seq
  • 513ATAC-seq
  • 342single cell RNA-seq
  • 208DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 33Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1755Transcription
  • 810DNA accessibility
  • 97DNA methylation
  • 333D chromatin structure
  • 1DNA sequencing
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 707February, 2021
  • 291May, 2020
  • 276August, 2021
  • 234May, 2021
  • 205February, 2023
  • 200May, 2022
  • 187June, 2019
  • 143July, 2018
  • 108July, 2019
  • 72October, 2019
  • 61March, 2020
  • 59September, 2020
  • 49April, 2018
  • 48November, 2019
  • 47September, 2023
  • 25February, 2020
  • 24August, 2017
  • 19April, 2020
  • 16January, 2021
  • 16November, 2018
  • 16November, 2020
  • 15May, 2023
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 5September, 2017
  • 4October, 2017
  • 4October, 2022
  • 3August, 2018
  • 2June, 2018
  • 1August, 2022
  • 1February, 2018
  • 1September, 2018
Available data
  • 1630bam
  • 1594bigWig
  • 1437tsv
  • 471bed narrowPeak
  • 315fastq
  • 223bigBed narrowPeak
  • 218bed bed3+
  • 203bed broadPeak
  • 202bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 2866Homo sapiens
Biosample type
  • 1775tissue
  • 739primary cell
  • 181in vitro differentiated cells
  • 172cell line
  • 7stem cell
Organ
  • 574pancreas
  • 528connective tissue
  • 418adipose tissue
  • 338epithelium
  • 302kidney
  • 259heart
  • 232liver
  • 159bone element
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 67brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 20lung
  • 18ureter
  • 16skeleton
  • 11embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2323AMP
  • 324HPAP
  • 156T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1723hg19
  • 1677GRCh38
  • 5hg18
Lab
  • 2068AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 189Kyle Gaulton, UCSD
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 20Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
Audit category:
  • 287inconsistent ontology term
  • 42audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

2874 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR RNA-seq
...and 7 more
tissue
adipose tissue382331
islet of Langerhans2036761743141
kidney497564136111
liver167201131111
bone element84
primary cell
Langerhans cell8548
pancreatic alpha cell423211311
monocyte54151
pancreatic beta cell111910161
exocrine cell39
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
adipocyte581
embryonic stem cell561
cell line
EndoC_BH1331916232
smooth muscle cell of the coronary artery528
HepG2911212
H1-hESC8
EndoC-BH1
stem cell
SB Ad3.11
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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