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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 1505total RNA-seq
  • 508ATAC-seq
  • 346single cell RNA-seq
  • 206DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 56pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1873Transcription
  • 803DNA accessibility
  • 97DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 707February, 2021
  • 291May, 2020
  • 276August, 2021
  • 234May, 2021
  • 205February, 2023
  • 187June, 2019
  • 176May, 2022
  • 167July, 2018
  • 113August, 2017
  • 108July, 2019
  • 72October, 2019
  • 61March, 2020
  • 49April, 2018
  • 48November, 2019
  • 47September, 2023
  • 41September, 2018
  • 25February, 2020
  • 21September, 2020
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15February, 2018
  • 15May, 2023
  • 12November, 2018
  • 10December, 2019
  • 8January, 2018
  • 7August, 2020
  • 5January, 2019
  • 5March, 2019
  • 5March, 2023
  • 5October, 2017
  • 5September, 2017
  • 4October, 2022
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1August, 2022
  • 1December, 2018
Available data
  • 1778bam
  • 1767bigWig
  • 1599tsv
  • 463bed narrowPeak
  • 426fastq
  • 233bigBed narrowPeak
  • 214bed bed3+
  • 202bed broadPeak
  • 200bigBed broadPeak
  • 155txt
  • 152zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 2977Homo sapiens
Biosample type
  • 1835tissue
  • 770primary cell
  • 195in vitro differentiated cells
  • 178cell line
  • 7stem cell
Organ
  • 684pancreas
  • 527connective tissue
  • 414adipose tissue
  • 378epithelium
  • 302kidney
  • 259heart
  • 236liver
  • 159bone element
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 68brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 20lung
  • 18ureter
  • 16skeleton
  • 15embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5vein
  • 3spleen
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2472AMP
  • 286HPAP
  • 156T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1878hg19
  • 1849GRCh38
  • 5hg18
Lab
  • 2240AMP-T2D consortium
  • 286Klaus Kaestner, Upenn
  • 165Kyle Gaulton, UCSD
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 20Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 294inconsistent ontology term
  • 42audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
files.platform.term_name!
  • Illumina HiSeq 4000
BIOSAMPLE
ASSAY

2985 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR RNA-seq
...and 7 more
tissue
adipose tissue382331
islet of Langerhans2865061743141
kidney497564136111
liver167201131111
bone element84
primary cell
pancreatic alpha cell373511311
Langerhans cell6348
pancreatic beta cell202312161
monocyte54151
exocrine cell39
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
adipocyte5811
embryonic stem cell761
cell line
EndoC_BH1331916232
smooth muscle cell of the coronary artery528
HepG21411222
H1-hESC8
EndoC-BH1
stem cell
SB Ad3.11
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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