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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 136total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 4DNase-seq
  • 1Hi-C
Assay category
  • 163Transcription
  • 22DNA accessibility
  • 13D chromatin structure
Date released
  • 91August, 2017
  • 40September, 2018
  • 25July, 2018
  • 14February, 2018
  • 5January, 2019
  • 4October, 2017
  • 2November, 2018
  • 2October, 2018
  • 1August, 2018
  • 1December, 2018
  • 1June, 2018
Available data
  • 186fastq
  • 185bigWig
  • 184bam
  • 163tsv
  • 21bed narrowPeak
  • 18bigBed narrowPeak
  • 5bed broadPeak
  • 4bigBed broadPeak
  • 2bed bed3+
Organism
  • 186Homo sapiens
Biosample type
  • 95tissue
  • 70primary cell
  • 15in vitro differentiated cells
  • 6cell line
Organ
  • 154pancreas
  • 57epithelium
  • 7liver
  • 4embryo
  • 3connective tissue
  • 1brain
Project
  • 186AMP
Genome assembly (visualization)
  • 185hg19
  • 184GRCh38
Lab
  • 185AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 7inconsistent ontology term
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

186 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
tissue
islet of Langerhans891
body of pancreas3
brain1
liver1
primary cell
pancreatic beta cell1024
pancreatic alpha cell1013
pancreatic acinar cell443
pancreatic ductal cell424
co-expressing pancreatic endocrine cell2
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
primitive gut cell2
cell line
HepG251
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