Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 37Transcription
  • 6DNA methylation
  • 4DNA accessibility
Date released
  • 21April, 2018
  • 11July, 2018
  • 5January, 2018
  • 5November, 2018
  • 4August, 2017
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 51fastq
  • 46bigWig
  • 42bam
  • 34tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bed bed3+
  • 2bed narrowPeak
  • 2bigBed broadPeak
  • 2bigBed narrowPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 52Homo sapiens
Biosample type
  • 37primary cell
  • 10tissue
  • 4in vitro differentiated cells
  • 1stem cell
Organ
  • 29pancreas
  • 26epithelium
  • 3adipose tissue
  • 3connective tissue
  • 2brain
  • 2liver
  • 1embryo
Project
  • 51AMP
  • 1HPAP
Genome assembly (visualization)
  • 41GRCh38
  • 36hg19
  • 5hg18
Lab
  • 50AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

52 results

search-icontable-tab-icon
Clear Filters
single cell RNA-seq
WGBS
GRO-seq
ATAC-seq
DNase-seq
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
tissue
adipose tissue3
liver11
pancreas2
brain1
cerebellum (Hemisphere)1
in vitro differentiated cells
Posterior foregut1
definitive endodermal cell1
pancreatic endoderm1
primitive gut cell1
stem cell
hESC1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego