Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 1522total RNA-seq
  • 482ATAC-seq
  • 368single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 75WGBS
  • 68snATAC-seq
  • 57pCHi-C
  • 33Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5STARR-seq
  • 4Capture-C
  • 4FAIRE-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1912Transcription
  • 766DNA accessibility
  • 97DNA methylation
  • 333D chromatin structure
  • 1DNA sequencing
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 691February, 2021
  • 291May, 2020
  • 276August, 2021
  • 234May, 2021
  • 205February, 2023
  • 187June, 2019
  • 168July, 2018
  • 161May, 2022
  • 112August, 2017
  • 108July, 2019
  • 72October, 2019
  • 61March, 2020
  • 58September, 2020
  • 49April, 2018
  • 48November, 2019
  • 47September, 2023
  • 41September, 2018
  • 25February, 2020
  • 19April, 2020
  • 17November, 2018
  • 16January, 2021
  • 16November, 2020
  • 15February, 2018
  • 15May, 2023
  • 10December, 2019
  • 7August, 2020
  • 7October, 2017
  • 5March, 2023
  • 4August, 2018
  • 4March, 2019
  • 4October, 2022
  • 3January, 2018
  • 3June, 2018
  • 2October, 2018
  • 1August, 2022
Available data
  • 1798bam
  • 1759bigWig
  • 1595tsv
  • 483bed narrowPeak
  • 463fastq
  • 232bigBed narrowPeak
  • 220bed bed3+
  • 207bed broadPeak
  • 206bigBed broadPeak
  • 161txt
  • 113zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 2974Homo sapiens
Biosample type
  • 1867tissue
  • 745primary cell
  • 192in vitro differentiated cells
  • 172cell line
  • 6stem cell
Organ
  • 679pancreas
  • 531connective tissue
  • 418adipose tissue
  • 348epithelium
  • 302kidney
  • 259heart
  • 233liver
  • 159bone element
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 67brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 20lung
  • 18ureter
  • 16skeleton
  • 14embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2487AMP
  • 268HPAP
  • 156T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1894hg19
  • 1847GRCh38
Lab
  • 2232AMP-T2D consortium
  • 268Klaus Kaestner, Upenn
  • 189Kyle Gaulton, UCSD
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 20Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 294inconsistent ontology term
  • 26audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
files.read_length!
  • 50
BIOSAMPLE
ASSAY

2982 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
STARR-seq
Capture-C
FAIRE-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
...and 6 more
tissue
adipose tissue382331
islet of Langerhans2926761743141
kidney497564136111
liver167201231111
bone element84
primary cell
Langerhans cell8432
pancreatic alpha cell521012311
monocyte54151
pancreatic beta cell21712161
exocrine cell39
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
adipocyte5811
embryonic stem cell761
cell line
EndoC_BH13319162321
smooth muscle cell of the coronary artery528
HepG2911212
H1-hESC8
EndoC-BH1
stem cell
SB Ad3.11
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego