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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 49ATAC-seq
  • 16snATAC-seq
  • 5GRO-seq
  • 5total RNA-seq
  • 1FAIRE-seq
  • 1Hi-C
  • 1single cell RNA-seq
Assay category
  • 66DNA accessibility
  • 6Transcription
  • 13D chromatin structure
Date released
  • 39May, 2022
  • 16February, 2021
  • 5January, 2018
  • 5January, 2019
  • 5September, 2017
  • 3August, 2017
  • 1December, 2018
  • 1March, 2019
  • 1November, 2018
  • 1October, 2017
  • 1September, 2020
Available data
  • 40zippedFastqFolder
  • 38fastq
  • 20bigWig
  • 16bam
  • 9bed narrowPeak
  • 9bigBed narrowPeak
  • 5tsv
  • 1bed broadPeak
Organism
  • 78Homo sapiens
Biosample type
  • 64primary cell
  • 6cell line
  • 4in vitro differentiated cells
  • 3tissue
  • 1stem cell
Organ
  • 49pancreas
  • 47epithelium
  • 6liver
  • 1brain
  • 1embryo
Project
  • 56HPAP
  • 22AMP
Genome assembly (visualization)
  • 14GRCh38
  • 14hg19
  • 5hg18
Lab
  • 56Klaus Kaestner, Upenn
  • 21AMP-T2D consortium
  • 1Mark McCarthy, Oxford
Audit category:
  • 16audit script error
assay_title!
  • ChIP-seq
BIOSAMPLE
ASSAY

78 results

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Clear Filters
ATAC-seq
snATAC-seq
GRO-seq
total RNA-seq
FAIRE-seq
Hi-C
single cell RNA-seq
primary cell
pancreatic alpha cell25
Langerhans cell161
pancreatic beta cell16
pancreatic acinar cell6
cell line
HepG251
in vitro differentiated cells
Posterior foregut1
definitive endodermal cell1
pancreatic endoderm1
primitive gut cell1
tissue
cerebellum (Hemisphere)1
islet of Langerhans1
pancreas1
stem cell
hESC1
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