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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
57
ATAC-seq
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
62
Transcription
61
DNA accessibility
Date released
68
February, 2021
43
February, 2023
3
July, 2019
3
October, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
76
bam
60
bigWig
58
tsv
57
bed narrowPeak
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
4
txt
Organism
123
Homo sapiens
Biosample type
61
tissue
60
cell line
2
primary cell
Organ
727
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
123
AMP
Genome assembly (visualization)
111
GRCh38
80
hg19
Lab
123
AMP-T2D consortium
assay_title!
ChIP-seq
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
123 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
2
tibial artery
1
1
2
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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