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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
37
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
30
June, 2019
18
July, 2019
12
February, 2020
2
March, 2020
2
November, 2018
2
October, 2019
1
February, 2023
1
October, 2017
Available data
50
bigWig
47
bam
35
bed bed3+
33
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
26
tsv
3
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
68
Homo sapiens
Biosample type
56
tissue
12
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
18
ureter
16
skeleton
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
68
AMP
Genome assembly (visualization)
46
GRCh38
41
hg19
Lab
68
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ChIP-seq
lab.title!
Xin Sun, UCSD
organ_slims!
embryo
BIOSAMPLE
ASSAY
68 results
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DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
14
1
1
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
Ammon's horn
1
1
1
caudate nucleus
1
1
+ See 20 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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