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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
64
total RNA-seq
18
snATAC-seq
17
pCHi-C
16
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
64
Transcription
34
DNA accessibility
Date released
81
May, 2021
May, 2020
May, 2022
23
February, 2023
16
January, 2021
Available data
58
bigWig
51
bam
51
tsv
2
bed bed3+
Organism
120
Homo sapiens
Biosample type
77
primary cell
28
tissue
10
in vitro differentiated cells
5
cell line
Organ
27
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
107
T1D
13
AMP
Genome assembly (visualization)
58
hg19
51
GRCh38
Lab
2005
AMP-T2D consortium
190
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
120
Kyle Gaulton, UCSD
47
KPMP
20
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_title!
ChIP-seq
month_released!
May, 2020
May, 2022
BIOSAMPLE
ASSAY
120 results
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total RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
51
1
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
tissue
islet of Langerhans
5
6
11
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
5
cell line
EndoC_BH1
3
2
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