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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
189
total RNA-seq
22
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
4
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
whole genome sequencing assay
Assay category
192
Transcription
28
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
13
August, 2021
10
July, 2019
6
August, 2017
5
December, 2019
5
January, 2019
5
March, 2020
4
November, 2018
February, 2021
2
June, 2019
2
October, 2019
1
December, 2018
1
February, 2020
Available data
190
bigWig
176
tsv
170
bam
27
bed narrowPeak
13
fastq
6
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
hdf5
1
vcf
Organism
238
Homo sapiens
Biosample type
207
tissue
21
cell line
10
primary cell
Organ
696
pancreas
363
epithelium
294
kidney
236
liver
199
heart
76
connective tissue
74
vasculature
71
blood vessel
68
brain
57
musculature of body
56
eye
50
limb
47
artery
32
adipose tissue
20
lung
18
ureter
15
embryo
9
blood
9
bodily fluid
9
bone element
8
nerve
8
skeleton
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
238
AMP
Genome assembly (visualization)
194
hg19
170
GRCh38
Lab
185
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
ChIP-seq
month_released!
February, 2021
BIOSAMPLE
ASSAY
238 results
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total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
whole genome sequencing assay
tissue
liver
167
20
2
3
1
1
1
1
right lobe of liver
3
1
2
1
2
sigmoid colon
1
small intestine
1
cell line
HepG2
14
1
2
1
2
1
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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