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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
54
total RNA-seq
45
ATAC-seq
8
snATAC-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
57
DNA accessibility
56
Transcription
Date released
60
February, 2021
35
February, 2023
8
January, 2021
July, 2019
3
October, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
January, 2018
Available data
65
bam
58
bigWig
56
tsv
48
bed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
Organism
113
Homo sapiens
Biosample type
61
cell line
44
tissue
8
primary cell
Organ
720
pancreas
513
connective tissue
406
adipose tissue
380
epithelium
291
kidney
234
heart
229
liver
159
bone element
122
vasculature
120
blood vessel
104
artery
55
eye
51
limb
50
brain
47
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
105
AMP
8
T1D
Genome assembly (visualization)
100
GRCh38
66
hg19
Lab
105
AMP-T2D consortium
8
Kyle Gaulton, UCSD
assay_title!
ChIP-seq
month_released!
July, 2019
October, 2018
BIOSAMPLE
ASSAY
113 results
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total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
GM12878
1
tissue
coronary artery
1
35
2
tibial artery
1
1
2
pulmonary artery
2
primary cell
peripheral blood mononuclear cell
8
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