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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
189
total RNA-seq
23
ATAC-seq
5
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
28
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
40
May, 2022
13
August, 2021
10
July, 2019
6
August, 2017
5
December, 2019
5
January, 2019
4
November, 2018
3
February, 2021
3
March, 2020
2
October, 2019
1
December, 2018
1
February, 2020
1
June, 2019
Available data
189
bigWig
174
tsv
170
bam
27
bed narrowPeak
13
fastq
6
bed bed3+
5
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
238
Homo sapiens
Biosample type
206
tissue
23
cell line
9
primary cell
Organ
723
pancreas
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
238
AMP
Genome assembly (visualization)
195
hg19
170
GRCh38
Lab
185
AMP-T2D consortium
40
Karen Mohlke, UNC
13
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
ChIP-seq
month_released!
March, 2019
organ_slims!
connective tissue
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
238 results
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Clear Filters
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
20
2
3
1
1
1
1
1
right lobe of liver
3
1
2
1
2
cell line
HepG2
14
1
1
2
2
2
1
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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