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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
56
total RNA-seq
46
ATAC-seq
8
snATAC-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
DNA accessibility
58
Transcription
Date released
60
February, 2021
35
February, 2023
8
January, 2021
3
July, 2019
3
October, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
January, 2018
Available data
68
bam
61
bigWig
58
tsv
49
bed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
Organism
116
Homo sapiens
Biosample type
61
cell line
45
tissue
10
primary cell
Organ
726
pancreas
531
connective tissue
418
adipose tissue
393
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
108
AMP
8
T1D
Genome assembly (visualization)
103
GRCh38
69
hg19
Lab
108
AMP-T2D consortium
8
Kyle Gaulton, UCSD
assay_title!
ChIP-seq
month_released!
October, 2018
BIOSAMPLE
ASSAY
116 results
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total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
GM12878
1
tissue
coronary artery
1
36
2
tibial artery
1
1
2
pulmonary artery
2
primary cell
peripheral blood mononuclear cell
8
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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