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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
114
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
114
Transcription
15
DNA methylation
11
DNA accessibility
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
60
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
October, 2018
1
August, 2022
1
December, 2018
Available data
114
tsv
106
fastq
101
bam
101
bigWig
10
bed narrowPeak
10
bigBed narrowPeak
6
bed bedMethyl
6
bigBed bedMethyl
2
bed broadPeak
2
bigBed broadPeak
Organism
140
Homo sapiens
Biosample type
133
tissue
6
primary cell
1
in vitro differentiated cells
Organ
95
pancreas
12
brain
10
connective tissue
9
adipose tissue
7
liver
6
musculature of body
3
blood vessel
3
epithelium
3
heart
3
limb
3
vasculature
2
artery
1
eye
1
nerve
1
spinal cord
Project
140
AMP
Genome assembly (visualization)
103
hg19
98
GRCh38
Lab
140
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
ChIP-seq
month_released!
October, 2018
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
140 results
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total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
89
1
1
liver
3
1
skeletal muscle tissue
4
adipose tissue
3
right lobe of liver
1
1
1
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primary cell
skeletal muscle myoblast
1
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
adipocyte
1
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