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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
ChIP-seq
34
ATAC-seq
17
pCHi-C
4
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
201
Transcription
34
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
201
bam
195
bigWig
188
tsv
15
fastq
13
bed narrowPeak
4
hic
3
bedpe bed3+
3
cool
2
bed bed3+
1
txt
Organism
253
Homo sapiens
Biosample type
104
in vitro differentiated cells
89
primary cell
40
tissue
23
cell line
2
stem cell
Organ
60
pancreas
25
epithelium
6
embryo
3
heart
2
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
182
AMP
68
T1D
4
community
3
HPAP
1
ITG
Genome assembly (visualization)
211
hg19
202
GRCh38
Lab
169
AMP-T2D consortium
81
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
86
inconsistent ontology term
3
audit script error
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
258 results
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total RNA-seq
ATAC-seq
pCHi-C
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
MPRA
shRNA RNA-seq
siRNA RNA-seq
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
7
5
induced pluripotent stem cell
9
pancreatic endoderm
4
definitive endodermal cell
2
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primary cell
monocyte
52
13
1
1
CD8-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 15 more…
tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
cell line
EndoC_BH1
4
16
EndoC-BH1
1
1
MIN6
1
stem cell
SB Ad3.1
1
1
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