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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
560
total RNA-seq
84
RNA microarray
32
pCHi-C
27
snATAC-seq
26
ATAC-seq
18
single cell RNA-seq
ChIP-seq
10
Hi-C
6
WGBS
3
snDrop-seq
Assay category
578
Transcription
53
DNA accessibility
10
3D chromatin structure
6
DNA methylation
Date released
707
February, 2021
291
May, 2020
276
August, 2021
233
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
59
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
602
tsv
577
bam
563
bigWig
89
txt
45
fastq
18
bed narrowPeak
12
bedpe bed3+
10
hic
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
ibed
Organism
766
Homo sapiens
Biosample type
581
tissue
98
cell line
49
primary cell
34
in vitro differentiated cells
4
stem cell
Organ
457
connective tissue
387
adipose tissue
150
bone element
67
heart
64
blood vessel
64
vasculature
60
artery
43
pancreas
37
epithelium
10
kidney
8
skeleton
6
limb
6
liver
5
musculature of body
2
brain
2
intestine
1
adrenal gland
1
esophagus
1
gonad
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
thymus
1
urinary bladder
1
vein
Project
717
AMP
45
HPAP
4
T1D
Genome assembly (visualization)
598
hg19
576
GRCh38
Lab
721
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
144
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_title!
ChIP-seq
organ_slims!
large intestine
thymus
BIOSAMPLE
ASSAY
766 results
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total RNA-seq
RNA microarray
pCHi-C
snATAC-seq
ATAC-seq
single cell RNA-seq
Hi-C
WGBS
snDrop-seq
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
kidney
5
psoas muscle
2
1
2
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cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
28
2
HepG2
1
1
early embryonic cell
2
MCF-7
1
+ See 3 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
endothelial cell of umbilical vein
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
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