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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
571
total RNA-seq
84
RNA microarray
ChIP-seq
36
ATAC-seq
27
snATAC-seq
19
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
590
Transcription
63
DNA accessibility
6
DNA methylation
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
68
October, 2019
59
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
604
bam
586
bigWig
585
tsv
89
txt
86
fastq
32
bed narrowPeak
14
bigBed narrowPeak
7
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
748
Homo sapiens
Biosample type
545
tissue
89
primary cell
88
cell line
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
150
bone element
72
epithelium
72
pancreas
60
artery
60
blood vessel
60
heart
60
vasculature
8
kidney
8
skeleton
6
limb
3
liver
Project
703
AMP
45
HPAP
Genome assembly (visualization)
609
hg19
603
GRCh38
Lab
703
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_title!
ChIP-seq
organ_slims!
esophagus
vein
BIOSAMPLE
ASSAY
748 results
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Clear Filters
total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
10
3
6
pancreatic beta cell
10
4
pancreatic ductal cell
4
4
pancreatic acinar cell
2
3
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
26
HepG2
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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