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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 1053total RNA-seq
  • 506ATAC-seq
  • 365single cell RNA-seq
  • 203DNase-seq
  • 86RNA microarray
  • 84snATAC-seq
  • 69WGBS
  • 52pCHi-C
  • 33Hi-C
  • 20RRBS
  • 15small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1437Transcription
  • 798DNA accessibility
  • 90DNA methylation
  • 333D chromatin structure
  • 1DNA sequencing
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 291May, 2020
  • 271August, 2021
  • 252February, 2021
  • 232May, 2021
  • 200May, 2022
  • 191February, 2023
  • 181June, 2019
  • 166July, 2018
  • 107August, 2017
  • 90July, 2019
  • 69October, 2019
  • 59March, 2020
  • 59September, 2020
  • 47April, 2018
  • 47November, 2019
  • 47September, 2023
  • 41September, 2018
  • 23February, 2020
  • 19April, 2020
  • 17November, 2018
  • 16January, 2021
  • 15February, 2018
  • 14May, 2023
  • 10December, 2019
  • 10November, 2020
  • 7August, 2020
  • 7January, 2018
  • 7October, 2017
  • 5January, 2019
  • 5March, 2019
  • 5March, 2023
  • 5September, 2017
  • 4October, 2022
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1August, 2022
  • 1December, 2018
Available data
  • 1323bam
  • 1284bigWig
  • 1122tsv
  • 490fastq
  • 475bed narrowPeak
  • 228bigBed narrowPeak
  • 204bed bed3+
  • 199bed broadPeak
  • 197bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 8csv
  • 6bed bed3
  • 4hdf5
  • 3bed bedgraph
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 2522Homo sapiens
Biosample type
  • 1397tissue
  • 782primary cell
  • 178cell line
  • 166in vitro differentiated cells
  • 6stem cell
Organ
  • 728pancreas
  • connective tissue
  • 418adipose tissue
  • 395epithelium
  • 302kidney
  • 259heart
  • 239liver
  • 159bone element
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 68brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 20lung
  • 18ureter
  • 16skeleton
  • 15embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 1979AMP
  • 324HPAP
  • 155T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1395hg19
  • 1370GRCh38
  • 5hg18
Lab
  • 1727AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 188Kyle Gaulton, UCSD
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 20Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 3Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 286inconsistent ontology term
  • 42audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

2529 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
Capture-C
HiChIP
CRISPR RNA-seq
...and 7 more
tissue
islet of Langerhans2926861743141
kidney497564136111
liver167201231111
bone element84
coronary artery1362
primary cell
Langerhans cell8548
pancreatic alpha cell523512311
pancreatic beta cell212312161
monocyte54151
exocrine cell39
cell line
EndoC_BH1331916322
smooth muscle cell of the coronary artery528
HepG21411222
H1-hESC8
EndoC-BH1
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
embryonic stem cell761
cardiomyocytes (cardiac muscle cell)31222
stem cell
SB Ad3.11
hESC1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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