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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 1467total RNA-seq
  • 456ATAC-seq
  • 305single cell RNA-seq
  • 131DNase-seq
  • 85RNA microarray
  • 78snATAC-seq
  • 75WGBS
  • 55pCHi-C
  • 33Hi-C
  • 17RRBS
  • 17small RNA-seq
  • 10MeRIP-seq
  • 5GRO-seq
  • 4Capture-C
  • 4FAIRE-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3STARR-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1793Transcription
  • 669DNA accessibility
  • 93DNA methylation
  • 333D chromatin structure
  • 1DNA sequencing
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 699February, 2021
  • 291May, 2020
  • 234May, 2021
  • 205February, 2023
  • 200May, 2022
  • 168July, 2018
  • 146August, 2021
  • 115August, 2017
  • 109June, 2019
  • 97July, 2019
  • 63October, 2019
  • 59March, 2020
  • 59September, 2020
  • 49April, 2018
  • 48November, 2019
  • 41September, 2018
  • 25February, 2020
  • 19April, 2020
  • 18November, 2018
  • 16January, 2021
  • 16November, 2020
  • 15February, 2018
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 7December, 2019
  • 5January, 2019
  • 5March, 2019
  • 5March, 2023
  • 5September, 2017
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 2October, 2018
  • 1August, 2022
  • 1December, 2018
  • 1May, 2023
Available data
  • 1722bam
  • 1687bigWig
  • 1576tsv
  • 501fastq
  • 348bed narrowPeak
  • 161bigBed narrowPeak
  • 153zippedFastqFolder
  • 142bed bed3+
  • 130bed broadPeak
  • 128bigBed broadPeak
  • 99txt
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 22hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 3csv
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 2750Homo sapiens
Biosample type
  • 1598tissue
  • 788primary cell
  • 196in vitro differentiated cells
  • 169cell line
  • 7stem cell
Organ
  • 728pancreas
  • 531connective tissue
  • 418adipose tissue
  • 395epithelium
  • kidney
  • 259heart
  • 239liver
  • 159bone element
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 68brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 20lung
  • 18ureter
  • 16skeleton
  • 15embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2254AMP
  • 324HPAP
  • 156T1D
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1818hg19
  • 1695GRCh38
  • 5hg18
Lab
  • 2142AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 189Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 18Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 287inconsistent ontology term
  • 35audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
organ_slims!
  • kidney
BIOSAMPLE
ASSAY

2758 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
GRO-seq
Capture-C
FAIRE-seq
CRISPR genome editing followed by DNA sequencing
STARR-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
...and 6 more
tissue
adipose tissue382331
islet of Langerhans2926861743141
liver167201231111
bone element84
bone tissue58
primary cell
Langerhans cell8548
pancreatic alpha cell523512311
pancreatic beta cell212312161
monocyte54151
exocrine cell39
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
adipocyte5811
embryonic stem cell761
cell line
EndoC_BH13319162321
smooth muscle cell of the coronary artery528
HepG21411222
H1-hESC8
EndoC-BH1
stem cell
SB Ad3.11
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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