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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1338total RNA-seq
  • ChIP-seq
  • 508ATAC-seq
  • 368single cell RNA-seq
  • 206DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 70WGBS
  • 54pCHi-C
  • 30Hi-C
  • 19RRBS
  • 15small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3STARR-seq
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 1725Transcription
  • 803DNA accessibility
  • 90DNA methylation
  • 303D chromatin structure
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 704February, 2021
  • 263August, 2021
  • 234May, 2021
  • 205February, 2023
  • 185June, 2019
  • 168July, 2018
  • 160May, 2022
  • 147May, 2020
  • 109August, 2017
  • 98July, 2019
  • 70October, 2019
  • 59September, 2020
  • 58March, 2020
  • 49April, 2018
  • 48November, 2019
  • 47September, 2023
  • 41September, 2018
  • 24February, 2020
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15February, 2018
  • 15May, 2023
  • 14November, 2018
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5December, 2019
  • 5March, 2019
  • 5March, 2023
  • 5September, 2017
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 2October, 2018
  • 1August, 2022
Available data
  • 1643bam
  • 1589bigWig
  • 1426tsv
  • 488fastq
  • 464bed narrowPeak
  • 235bigBed narrowPeak
  • 213bed bed3+
  • 203bed broadPeak
  • 201bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 7bed bedgraph
  • 7csv
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
Organism
  • 2813Homo sapiens
Biosample type
  • 1664tissue
  • 799primary cell
  • 196in vitro differentiated cells
  • 155cell line
  • 7stem cell
Organ
  • 728pancreas
  • 531connective tissue
  • 418adipose tissue
  • 395epithelium
  • 302kidney
  • 259heart
  • liver
  • 159bone element
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 68brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 20lung
  • 18ureter
  • 16skeleton
  • 15embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2270AMP
  • 324HPAP
  • 156T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1712hg19
  • 1690GRCh38
  • 5hg18
Lab
  • 2067AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 189Kyle Gaulton, UCSD
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 293inconsistent ontology term
  • 42audit script error
Audit category:
  • 1inconsistent assembly
assay_title!
  • ChIP-seq
organ_slims!
  • liver
BIOSAMPLE
ASSAY

2821 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
STARR-seq
snDrop-seq
HiChIP
CRISPR RNA-seq
...and 6 more
tissue
adipose tissue382331
islet of Langerhans2926861743141
kidney497564136111
bone element84
bone tissue58
primary cell
Langerhans cell8548
pancreatic alpha cell523512311
pancreatic beta cell212312161
monocyte54151
exocrine cell39
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
adipocyte5811
embryonic stem cell761
cell line
EndoC_BH1331916232
smooth muscle cell of the coronary artery528
H1-hESC8
EndoC-BH1
HEK293T2
stem cell
SB Ad3.11
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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