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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • ChIP-seq
  • 1130total RNA-seq
  • 379ATAC-seq
  • 289single cell RNA-seq
  • 204DNase-seq
  • 87RNA microarray
  • 73snATAC-seq
  • 56pCHi-C
  • 25Hi-C
  • 24WGBS
  • 19RRBS
  • 16small RNA-seq
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3FAIRE-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1439Transcription
  • 659DNA accessibility
  • 44DNA methylation
  • 253D chromatin structure
  • 1DNA sequencing
Target of assay
  • 3control
Date released
  • 675February, 2021
  • 291May, 2020
  • 272August, 2021
  • 183June, 2019
  • 177May, 2021
  • 149February, 2023
  • 102July, 2019
  • 96May, 2022
  • 67October, 2019
  • 50March, 2020
  • 47September, 2023
  • 40September, 2020
  • 24February, 2020
  • 21August, 2017
  • 19April, 2020
  • 15February, 2018
  • 15May, 2023
  • 11July, 2018
  • 11November, 2018
  • 10April, 2018
  • 10December, 2019
  • 8January, 2018
  • 8January, 2021
  • 6November, 2019
  • 6November, 2020
  • 5January, 2019
  • 5March, 2023
  • 3October, 2017
  • 2June, 2018
  • 1August, 2018
  • 1December, 2018
  • 1October, 2022
  • 1September, 2018
Available data
  • 1323bam
  • 1317bigWig
  • 1183tsv
  • 418bed narrowPeak
  • 212bed bed3+
  • 209bigBed narrowPeak
  • 199bed broadPeak
  • 199bigBed broadPeak
  • 177fastq
  • 155txt
  • 73zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 16bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 2ibed
  • 1tar
  • 1vcf
Organism
  • 2325Homo sapiens
Biosample type
  • 1482tissue
  • 533primary cell
  • 196in vitro differentiated cells
  • 114cell line
  • 7stem cell
Organ
  • pancreas
  • 531connective tissue
  • 418adipose tissue
  • 395epithelium
  • 302kidney
  • 259heart
  • 239liver
  • 159bone element
  • 134vasculature
  • 131blood vessel
  • 107artery
  • 68brain
  • 57musculature of body
  • 56eye
  • 56limb
  • 20lung
  • 18ureter
  • 16skeleton
  • 15embryo
  • 9blood
  • 9bodily fluid
  • 8nerve
  • 5spleen
  • 5vein
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 1963AMP
  • 172HPAP
  • 126T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 1413hg19
  • 1383GRCh38
  • 5hg18
Lab
  • 1746AMP-T2D consortium
  • 172Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 138Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 16Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 1ITG
Audit category:
  • 228inconsistent ontology term
  • 38audit script error
  • 1inconsistent replicate
assay_title!
  • ChIP-seq
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

2332 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
WGBS
RRBS
small RNA-seq
GRO-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
FAIRE-seq
snDrop-seq
Capture-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
...and 5 more
tissue
adipose tissue382313
kidney497564136111
liver167201211311
bone element84
bone tissue58
primary cell
Langerhans cell8548
monocyte54151
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell1221
CD4-positive, alpha-beta memory T cell22
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
adipocyte5811
embryonic stem cell761
cell line
smooth muscle cell of the coronary artery528
HepG21412212
H1-hESC8
EndoC_BH132
EndoC-BH1
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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